Global warming has forced alpine chipmunks in Yosemite to higher ground, prompting a startling decline in the species’ genetic diversity, according to a new study by researchers at the University of California, Berkeley.
The study in the advance online publication of the journal Nature Climate Change, is one of the first to show a hit to the genetic diversity of a species because of a recent climate-induced change in the animals’ geographic range. What’s more, the genetic erosion occurred in the relatively short span of 90 years, highlighting the rapid threat changing climate can pose to a species.
With low genetic diversity a species can be more vulnerable to the effects of inbreeding, disease and other problems that threaten species survival, the researchers said.
“Climate change is implicated as the cause of geographic shifts observed among birds, small mammals and plants, but this new work shows that, particularly for mountain species like the alpine chipmunk, such shifts can result in increasingly fragmented and genetically impoverished populations,” said study lead author Emily Rubidge, who conducted the research while a Ph.D. student at UC Berkeley’s Museum of Vertebrate Zoology and the Department of Environmental Science, Policy and Management. “Under continued warming, the alpine chipmunk could be on the trajectory towards becoming threatened or even extinct.”
Rubidge worked with Craig Moritz, professor of integrative biology and director of the Museum of Vertebrate Zoology; James Patton, professor emeritus of integrative biology and curator of the Museum of Vertebrate Zoology; and Justin Brashares, associate professor in the Department of Environmental Science, Policy and Management.
The new findings build upon previous research that found major shifts in the range of small mammals in Yosemite National Park since the early 1900s. In 2003, biologists at UC Berkeley began an ambitious resurvey of Yosemite’s birds, mammals, reptiles and amphibians, retracing the steps originally taken between 1914 and 1920 by Joseph Grinnell, founder and former director of the Museum of Vertebrate Zoology.
The Grinnell Resurvey Project, led by Moritz and museum colleagues, found that many small mammals in Yosemite moved or retracted their ranges to higher, cooler elevations over the past century, a period when the average temperature in the park increased by 3 degrees Celsius, or about 5.4 degrees Fahrenheit.
Emily Rubidge shown at a rocky slope above Tuolumne Meadows at Yosemite National Park. This is an area where alpine chipmunks were abundant in the past, but have now disappeared. (Cole Burton photo) It is no surprise that the alpine chipmunk (Tamias alpinus) would be more sensitive to the temperature change, since it is a high-elevation species endemic to California’s Sierra Nevada, the researchers said. In the early 1900s, Grinnell and colleagues sighted alpine chipmunks at elevations of 7,800 feet. Now, the alpine chipmunk appears to be sticking to even higher elevations, retracting its range by about 1,640 feet upslope.
To test the genetic impact from that loss of geographic range, researchers compared genetic markers from 146 modern-day alpine chipmunks with those from 88 of their historical counterparts. Samples were collected from seven paired sites throughout Yosemite.
As a control, the researchers also looked at the genetics – both historic and modern – of lodgepole chipmunks (Tamias speciosus), a lower elevation species that had not changed its range over the past century.
The analysis of genetic markers revealed a significant decline in “allele richness” among the recently sampled alpine chipmunk populations compared with their historic counterparts. Moreover, the researchers noted that the modern chipmunks were more genetically differentiated across sites than in the past, a sign of increased fragmentation in the alpine chipmunk population.
Photo: An alpine chipmunk (Tamias alpinus) is shown at Yosemite's Ten Lakes Pass at an elevation of 9,631 feet. (Risa Sargent photo)
